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October,
25-28, 2005
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Tuesday,
October 25
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13:00
-13:15 UTC
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08:00
-08:15 EDT
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Willy
A. Valdivia Granda, Orion Integrated Biosciences
Inc.
Opening of the Virtual Conference
on Genomics and Bioinformatics
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Question |
Computational
Chemistry
Discussion Leader: Kim
Baldridge,
Universität Zürich, Switzerland
This
track will feature researchers working on computer-assisted
simulation of molecular systems and the analysis
of their properties by formalisms based on quantum
mechanics, classical mechanics and other mathematical
techniques. Researchers in this track are developing
new theories and computer programs to calculate
the properties of molecules (such as total energy,
dipole moment, vibrational frequencies) and
to apply these advances to problems of biological
significance.
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Discussion
Leader Remarks
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Video
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Alberto
Garcia, Universidad del Pais Vasco. Spain
First-principles Electronic-Structure
Calculations for Biological Systems with the SIESTA
code
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Video
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Question |
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Daniele
Passerone, University of Zürich. Switzerland
Photochemistry Meets Physics: Semiclassical Dynamics
of Light-driven Molecular Switches
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Video
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BREAK
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Ari
P Seitsonen, Université Pierre et Marie
Curie. Finland
Surface Chemistry and Catalysis:
Atomic-scale glimpse of reactions at ruthenium
dioxide surfaces
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Abstract
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Video
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Question |
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Amit
Majumdar, San Diego Supercomputer Center. USA
Grid Enabled Image Guided
Neurosurgery Using High Performance Computing
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Video
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Forum
Discussion
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Video
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BREAK
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Structural
Genomics Track
Discussion Leader: Maricel Kann, National
Institutes of Health
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Discussion
Leader Remarks
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Video
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Phil
Bourne University of California San Diego. USA
Functional Coverage of the
Human Genome by Existing Structures, Structural
Genomics Targets and Homology Models
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Video
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Julie
Bernauer, Yeast Structural Genomics - IBBMC UMR.
France
A new Protein-Protein Docking
Scoring Function Based on Interface Residues Properties
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Video
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BREAK
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Teresa
Przytycka National Institutes of Health. NCBI.
USA
Genomics meets Graph Theory
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Video
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Anna
Panchenko, National Institutes of Health. NCBI.
USA
Evolution of protein structures:
Analysis of Protein Loops |
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Video
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Wednesday,
October 26
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Ethics,
Education, Biomedical Research Networks (INBRE)
and the Government
Discussion Leaders
Steve
Jennings, University of Arkansas at Little
Rock. USA
Krishan Arora, National Institutes of Health.
USA
The
sequencing of the genome of several species
is allowing a better understanding of the
structure and dynamics of biological systems.
This research is also challenging researchers
with new ethical issues about the use of this
information and the sharing of the benefits.
At the same time, genomic advances are challenging
the development of new curricular programs
that can adapt to new advances. In this regard,
the ethics and education track will provide
an open forum for researchers, educators and
ethics worldwide to discuss the challenges
and opportunities dealing with training of
a new generation of researchers and the social
implications of the genomics, bioinformatics
and nanotechnology.
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Discussion Leaders Remarks
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Video
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Tan
Tin Wee Bioinformatics Centre. National University
of Singapore. Singapore
S* Alliance Introductory
Bioinformatics Online Course |
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Video
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Krishan
Arora, National Institutes of Health. USA
INBRE Bioinformatics
in Research and Education at IDeA Institutions
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Video
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Chris
Dwan The BioTeam. USA
BioTeam's iNquiry: Bridging the Gap Between Cluster
Computing and the User |
Abstract
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Video
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Tamara
Zemlo, The Science Advisory Board. USA
Balancing the Promise and
Peril of Pharmacogenomics |
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Video
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Question |
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Marcella
A. McClure, Montana State University. USA
Lariat Provides New Collaborative
Opportunities for the Northwest |
Abstract
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Video
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Question |
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Carol
Lushbough, University of South Dakota. USA
South Dakota INBRE Bioinformatics
Core Group's Novel Approach to Minority Mentoring
Experience |
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Video
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Question |
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Eric
Rouchka, University of Louisville. USA
Statewide Bioinformatics
in Kentucky
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Video
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Question |
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Panel
Discussion:
Scott Little, University of South Carolina,
USA
John Rose, University of South Carolina, USA
Deanne
Taylor, Serono Reproductive Institute. USA
Vivian Stojanoff, Brookhaven National Laboratory.
USA
The X6A workbench experience
Slides
John Baynes, University of South Carolina, USA
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Video
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BREAK
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Genomics
of Cancer and
Bioinformatics
for Toxicogenomics
Discussion
Leader:Willy A. Valdivia-Granda, Orion Integrated
Biosciences, Inc.
The
goals of the toxicogenomics track is to
feature researchers trying to elucidate
molecular mechanisms of involved in studying:
a) cellular responses to environmental stresses,
b) how responses to environmental stressors
extrapolate from one species to another;
c) identify toxicant-specific and adverse
effects-specific patterns of gene expression;
d) develop gene expression-based biomarkers
to particular toxic components; e) develop
a bioinformatic tools to integrate genomic
data dealing with the effects of toxicological
compounds.
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Discussion
Leader Remarks |
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Susanna-Assunta
Sansone. The European Bioinformatics Institute.
UK
ToxicogenOMICS Omics standards,
resources and data at EBI
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Video
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Daniel
Rubin, Stanford University. USA
Moving Beyond Ontology Libraries:
Integrating and Accessing Biomedical Ontologies
to Annotate Experimental Data
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Video
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Vladimir
A. Kuznetsov., Genome Institute of Singapore.
Singapore
How the Semantic Web Will
Revolutionize Informatics Data Integration
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Video
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BREAK
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Dennis
Quan. IBM T. J. Watson Research Center. USA
How the Semantic Web Will
Revolutionize Informatics Data Integration
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Abstract |
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Video
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Keith
Dunker University of Indiana. USA
Intrinsic disorder in Cell-Signaling and Cancer-associated
Proteins
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Video
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Susan
Wilson. Australian National University. Australia
Some Fundamental Considerations
in Interpretation of Gene-expression Profile Data
with Applications to Cancer Research
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Slides
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Video
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Thursday,
October 27
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Biocomplexity
and Systems Biology
Alissa
Resch, National Institutes
of Health
Systems
biology and biocomplexity aims to integrate
the knowledge of biologists, mathematicians,
engineers, and computer scientists with those
of evolutionary biologists, pharmacologists,
and pathologists to produce a robust and comprehensive
understanding of the multiresulution interactions
within living cells. This track will focus
on research that has a computational component,
but is strongly coupled with and relevant
for experimental investigationsgations and
advanced visualization tools.
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Discussion
Leader Remarks |
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John
Mattick, University of Queensland. Australia
The hidden layer of noncoding
RNA in the evolution and genetic programming of
complex organisms |
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Video
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Richard
J. Feldmann. Global Determinants Inc. USA
Understanding the Control
of Gene Expression in Large and Small Genomes
by means of the Computational Determination of
Connectrons |
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Eugene
Koonin. National Institutes of Health. USA
Evolutionary Systems Biology
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Video
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M. Madan Babu, National Institutes of Health.
USA
Insights into the Structure,
Evolution and Dynamics of Transcriptional Regulatory
Networks
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Video
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Jason
Papin. University of Virginia. USA
Intracellular Signaling
Networks: Reconstruction and Analysis
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BREAK
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Biocomplexity/
Artificial and Synthetic
Life
This
track will feature researchers studying life
through the use of human-made analogs of living
systems. The synthetic life aspect of this
track will feature researchers focus in stretching
the boundaries of life and machines until
the two overlap to yield truly programmable
organisms.
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Discussion
Leader Remarks |
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Michael
Ellison. University of Alberta. Canada
Modeling Cell Function by
Discrete Automata: Simple Rules for Complex Behaviour
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Video
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Friday,
October 28
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Infectious
Diseases
Discussion
Leader Orli
G. Bahcall
Less
than 10% of the world's resources for health
research are devoted to 90% of the world's
health problems. The infectious diseases
track will aim to present the recent developments
in the application of genomic and computational
tools to find relevant targets for vaccines
and drugs against tropical, sexually transmitted
diseases and other pathogens afflicting
large number of people. This track will
also focus in the understanding of signaling,
regulatory and metabolic pathways involved
in immunity and molecular aspects of host-parasite
relationships.
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Discussion
Leader Remarks |
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Slides
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Pandjassare
Kangueane. Nanyang Technological University. Singapore
Designing Peptide Vaccine
Rhetoric or Reality |
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Slides
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Video
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